Center for Bioinformatics Research
Affiliated Faculty
Mehmet Dalkilic, Matthew Hahn, Predrag Radivojac, Haixu Tang, Yuzhen Ye
Websites
The Center for Bioinformatics Research works in a number of areas including: Evolution and comparative genomics (e.g., evolution of gene families/gene regulation, population genomics, gene cluster analysis, mobile genetic elements); Human disease (e.g., disease ontology, molecular analysis of protein diseases); protein bioinformatics (structural bioinformatics, automated functional annotation, protein-protein interactions, text mining); # Proteomics (computational glycomics and glycoproteomics, peptide/protein identification and quantification using mass spectrometry); Sequence analysis (string pattern matching, motif discovery, fragment assembly, RNA editing, genome alignment and segmental duplications); and systems biology (biochemical pathways, data integration, discovery in gene/protein networks, regulatory genomics, theoretical enzymology, embryology)
Special Talks
2012
- April 12, 2012
Baby Feces and Bioinformatics: Understanding the Developing Human Gut Superorgan Using Metagenomics
Iddo Friedberg - April 18, 2012
Sample size calculation for differential expression analysis of RNA-seq data under Poisson distribution
Yu Shyr, Ph.D.
2011
- January 27, 2011
Scalable computing for econinformatics
Scott Emerich - April 28, 2011
A systems biology approach to cancer marker identification in blood and urine
Ying Xu - April 29, 2011
Elucidation of Organizational Principles of Bacterial Genomes: towards understanding how information is organized in bacterial genomes
Ying Xu - May 4, 2011
Population scale detection of common and rare genomic rearrangements and transcriptomic aberrations
S. Cenk Sahinalp - June 7, 2011
Pancreatic Cancer: Role of Environmental Factors
Barbara Hocevar
2010
- January 14, 2010
From sequence to structure, to function, and back again: Integrating knowledge-based approaches with physical intuitions for protein folding, binding, and design
by Yaoqi Zhou - January 28, 2010
Mixed-effect models for high-throughput mass spectrometry-based molecular profiling experiments
by Olga Vitek - March 4, 2010
Exploring marine microbial diversity using metagenomics
by Shibu Yooseph - March 25, 2010
Computational analysis of small silencing RNAs
by Zhiping Weng - April 22, 2010
Structural Variation Discovery in High Throughput Sequenced Genomes and Transcriptomes
by Cenk Sahinalp - September 16, 2010
Scalable data mining for functional metagenomics
by Curtis Huttenhower - September 20, 2010
Research Issues in Data Intensive Semantics
by Sang-Goo Lee - November 11, 2010
Predicting and analyzing cellular networks
by Mona Singh - November 18, 2010
Finding patterns in chromatin data with Segway
by Michael M. Hoffman
2009
- October 22, 2009
ChIP-sequencing data analysis and applications
by Peter Park
